Commits · master · Roman Sarrazin-Gendron / RNABayesPairing2

19 Mar, 2021 3 commits
- change notebook name · 2234c543
  Xingyu authored Mar 19, 2021
  
  2234c543
- fixed flipped modules · f4574853
  Roman Sarrazin-Gendron authored Mar 19, 2021
  
  f4574853
- fixed rotations and inline ss · 07b6f626
  Roman Sarrazin-Gendron authored Mar 19, 2021
  
  07b6f626
13 Mar, 2021 9 commits
- fix json error · a68b7826
  Xingyu CHEN authored Mar 12, 2021
  
  a68b7826
- Merge branch 'master' of https://jwgitlab.cs.mcgill.ca/sarrazin/rnabayespairing2 · 0ff3256a
  Xingyu CHEN authored Mar 12, 2021
  
  0ff3256a
- add index generation to dataset notebook · 7dd7bec4
  Xingyu CHEN authored Mar 12, 2021
  
  7dd7bec4
- Delete duplicate notebook · ef30f786
  Xingyu authored Mar 12, 2021
  
  ef30f786
- Delete duplicated 3dmotifatlas_to_bp2.ipynb · f91b859e
  Xingyu authored Mar 12, 2021
  
  f91b859e
- add dataset info · ace2729b
  Xingyu CHEN authored Mar 12, 2021
  
  ace2729b
- add dataset info · e52395b0
  Xingyu CHEN authored Mar 12, 2021
  
  e52395b0
- update dataset info · 430ddd07
  Xingyu CHEN authored Mar 12, 2021
  
  430ddd07
- add index generation to dataset notebook · 625ed88b
  Xingyu CHEN authored Mar 12, 2021
  
  625ed88b
05 Mar, 2021 6 commits
- updated dataset names · 743a85a9
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  743a85a9
- Merge branch 'master' of http://jwgitlab.cs.mcgill.ca/sarrazin/rnabayespairing2 · 4ce28dac
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  4ce28dac
- update dataset generation notebook · 233042d9
  Xingyu CHEN authored Mar 04, 2021
  
  233042d9
- update dataset generation notebook · 94474610
  Xingyu CHEN authored Mar 04, 2021
  
  94474610
- new dataset · 3a9a6af5
  Xingyu CHEN authored Mar 04, 2021
  
  3a9a6af5
- new dataset · f0d95f13
  Xingyu CHEN authored Mar 04, 2021
  
  f0d95f13
04 Mar, 2021 5 commits
- fixed multi-seq, fixed windows, fixed stats, deverbosed chefschoice · d04f4949
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  d04f4949
- fixed inline seq and missing pos in visual output · e092a727
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  e092a727
- Fixed multiple seqs, TODO fix windows · e6a54362
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  e6a54362
- attempt fix bug file w multiple sequences chef choice · a0650d1a
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  a0650d1a
- json output, automated svg drawing · 079c6366
  Roman Sarrazin-Gendron authored Mar 03, 2021
  
  079c6366
03 Mar, 2021 1 commit
- Pushed json datasets · a75f02ce
  Yixiong Sun authored Mar 03, 2021
  
  a75f02ce
01 Mar, 2021 1 commit
- Updated BN construction to use json dataset and optimized running of call_makeBN · 36c49781
  Yixiong Sun authored Mar 01, 2021
  
  36c49781
23 Feb, 2021 1 commit
- Changed module_from_desc to json output · 50fe5983
  Yixiong Sun authored Feb 23, 2021
  
  50fe5983
29 Dec, 2020 2 commits
- Merge branch 'master' of http://jwgitlab.cs.mcgill.ca/sarrazin/rnabayespairing2 · 24acde24
  Yixiong Sun authored Dec 29, 2020
```
Merge commits
```
  24acde24
- Small fixes · 0dbcd0f6
  Yixiong Sun authored Dec 29, 2020
  
  0dbcd0f6
18 Dec, 2020 2 commits
- Merge branch 'master' of jwgitlab.cs.mcgill.ca:sarrazin/rnabayespairing2 · a2345fb6
  Roman SARRAZIN GENDRON authored Dec 18, 2020
  
  a2345fb6
- updated FDR comments · 101e49eb
  Roman SARRAZIN GENDRON authored Dec 18, 2020
  
  101e49eb
26 Nov, 2020 3 commits
- Merge branch 'treedecomp' into 'master' · fd70e074
  Roman Sarrazin-Gendron authored Nov 26, 2020
```
Use treedecomp package

See merge request !1
```
  fd70e074
- Fix · 870513fb
  Hua-Ting Yao authored Nov 26, 2020
  
  870513fb
- Use treedecomp package · 52eaa2f1
  Hua-Ting Yao authored Nov 26, 2020
  
  52eaa2f1
23 Nov, 2020 2 commits
- Fixed aiming for in sequences longer than 200 nucleotides. The positions are... · c0043541
  Yixiong Sun authored Nov 22, 2020
```
Fixed aiming for in sequences longer than 200 nucleotides. The positions are not always sorted so slicing can result in incorrect sequences
```
  c0043541
- Error with module position in very long sequences in ss validation. Skipped for now. · 47f94660
  Yixiong Sun authored Nov 22, 2020
  
  47f94660
22 Nov, 2020 1 commit
- Changed output to save after every module number for continuous validation · d8468622
  Yixiong Sun authored Nov 22, 2020
  
  d8468622
18 Nov, 2020 1 commit

Updated validation files for BP2 with reliable dataset. Function added in... · 14a10753

Yixiong Sun authored Nov 18, 2020

Updated validation files for BP2 with reliable dataset. Function added in make_BN_from_carnaval for temporary creation of a BN without having to refactor previous code. Run validation.py with the specified arguments.

14a10753

16 Nov, 2020 1 commit
- Removed 0.25 added to total sum for incorrect probabilities · a878dcd6
  Yixiong Sun authored Nov 16, 2020
  
  a878dcd6
12 Nov, 2020 2 commits
- fixed positions in alignment parsing · 650146c8
  Roman SARRAZIN GENDRON authored Nov 11, 2020
  
  650146c8
- fixed conflict · 88589318
  Roman SARRAZIN GENDRON authored Nov 11, 2020
  
  88589318