Commits · e6a54362eba9c9e4ec85f92373da2c419a5a864e · Roman Sarrazin-Gendron / RNABayesPairing2

04 Mar, 2021 3 commits
- Fixed multiple seqs, TODO fix windows · e6a54362
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  e6a54362
- attempt fix bug file w multiple sequences chef choice · a0650d1a
  Roman Sarrazin-Gendron authored Mar 04, 2021
  
  a0650d1a
- json output, automated svg drawing · 079c6366
  Roman Sarrazin-Gendron authored Mar 03, 2021
  
  079c6366
03 Mar, 2021 1 commit
- Pushed json datasets · a75f02ce
  Yixiong Sun authored Mar 03, 2021
  
  a75f02ce
01 Mar, 2021 1 commit
- Updated BN construction to use json dataset and optimized running of call_makeBN · 36c49781
  Yixiong Sun authored Mar 01, 2021
  
  36c49781
23 Feb, 2021 1 commit
- Changed module_from_desc to json output · 50fe5983
  Yixiong Sun authored Feb 23, 2021
  
  50fe5983
29 Dec, 2020 2 commits
- Merge branch 'master' of http://jwgitlab.cs.mcgill.ca/sarrazin/rnabayespairing2 · 24acde24
  Yixiong Sun authored Dec 29, 2020
```
Merge commits
```
  24acde24
- Small fixes · 0dbcd0f6
  Yixiong Sun authored Dec 29, 2020
  
  0dbcd0f6
18 Dec, 2020 2 commits
- Merge branch 'master' of jwgitlab.cs.mcgill.ca:sarrazin/rnabayespairing2 · a2345fb6
  Roman SARRAZIN GENDRON authored Dec 18, 2020
  
  a2345fb6
- updated FDR comments · 101e49eb
  Roman SARRAZIN GENDRON authored Dec 18, 2020
  
  101e49eb
26 Nov, 2020 3 commits
- Merge branch 'treedecomp' into 'master' · fd70e074
  Roman Sarrazin-Gendron authored Nov 26, 2020
```
Use treedecomp package

See merge request !1
```
  fd70e074
- Fix · 870513fb
  Hua-Ting Yao authored Nov 26, 2020
  
  870513fb
- Use treedecomp package · 52eaa2f1
  Hua-Ting Yao authored Nov 26, 2020
  
  52eaa2f1
23 Nov, 2020 2 commits
- Fixed aiming for in sequences longer than 200 nucleotides. The positions are... · c0043541
  Yixiong Sun authored Nov 22, 2020
```
Fixed aiming for in sequences longer than 200 nucleotides. The positions are not always sorted so slicing can result in incorrect sequences
```
  c0043541
- Error with module position in very long sequences in ss validation. Skipped for now. · 47f94660
  Yixiong Sun authored Nov 22, 2020
  
  47f94660
22 Nov, 2020 1 commit
- Changed output to save after every module number for continuous validation · d8468622
  Yixiong Sun authored Nov 22, 2020
  
  d8468622
18 Nov, 2020 1 commit

Updated validation files for BP2 with reliable dataset. Function added in... · 14a10753

Yixiong Sun authored Nov 18, 2020

Updated validation files for BP2 with reliable dataset. Function added in make_BN_from_carnaval for temporary creation of a BN without having to refactor previous code. Run validation.py with the specified arguments.

14a10753

16 Nov, 2020 1 commit
- Removed 0.25 added to total sum for incorrect probabilities · a878dcd6
  Yixiong Sun authored Nov 16, 2020
  
  a878dcd6
12 Nov, 2020 3 commits
- fixed positions in alignment parsing · 650146c8
  Roman SARRAZIN GENDRON authored Nov 11, 2020
  
  650146c8
- fixed conflict · 88589318
  Roman SARRAZIN GENDRON authored Nov 11, 2020
  
  88589318
- small updates to makeBN · 4758d8d8
  Roman SARRAZIN GENDRON authored Nov 11, 2020
  
  4758d8d8
10 Nov, 2020 1 commit
- added multiprocessing · 024fa970
  SarrazinG authored Nov 10, 2020
  
  024fa970
09 Nov, 2020 1 commit
- fixed bracket issue · 237061c2
  SarrazinG authored Nov 09, 2020
  
  237061c2
04 Nov, 2020 2 commits
- added all_rna3dmotif_graphs · f7b657ef
  SarrazinG authored Nov 04, 2020
  
  f7b657ef
- Changed linewidth to linewidths for networkx and added lines for creating... · 48880ce4
  Yixiong Sun authored Nov 03, 2020
```
Changed linewidth to linewidths for networkx and added lines for creating Graphs folder if it doesn't exist
```
  48880ce4
03 Nov, 2020 2 commits
- re-added rna3dmotif · 01b4fb11
  SarrazinG authored Nov 03, 2020
  
  01b4fb11
- updated datasets · 57f7c380
  SarrazinG authored Nov 03, 2020
  
  57f7c380
28 Jul, 2020 2 commits
- now correctly keeps track of ungapped sequence · 8e7c0a0f
  Roman Sarrazin-Gendron authored Jul 28, 2020
  
  8e7c0a0f
- added support for .afa AND stockholm · ee3b7cf1
  Roman Sarrazin-Gendron authored Jul 28, 2020
  
  ee3b7cf1
24 Jun, 2020 10 commits
- made bp2 less verbose · 9b9d5255
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  9b9d5255
- updated README · 4ba88852
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  4ba88852
- updated README · 3204623d
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  3204623d
- updated requirements · 34cb6517
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  34cb6517
- updated requirements · 261bd876
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  261bd876
- updated parse_sequences for default dataset · 71aa419b
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  71aa419b
- fixed numbers in README · a05978bc
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  a05978bc
- added models for atlas and rna3dmotif · a2c275b3
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  a2c275b3
- first commit of bp2 · c8f561a7
  Roman SARRAZIN GENDRON authored Jun 24, 2020
  
  c8f561a7
- cleared repo · 56e51265
  Roman SARRAZIN GENDRON authored Feb 14, 2020 and Roman Sarrazin-Gendron committed Jun 24, 2020
  
  56e51265
14 Feb, 2020 1 commit
- added find_modules · 7a92fd09
  Roman SARRAZIN GENDRON authored Feb 14, 2020
  
  7a92fd09