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Roman Sarrazin-Gendron
RNABayesPairing2
Commits
9b7a2487
Commit
9b7a2487
authored
Jun 29, 2021
by
Yixiong Sun
Browse files
Added cob experiment desc files and cv indices
parent
f624c9c9
Changes
13
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bayespairing/test/2GDI.X.1.desc
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9b7a2487
id: 1
Bases: 14_U 15_C 51_G 52_U 53_A 54_U 55_C 56_A 57_C 82_G 83_G 84_A 85_A
( 82_G )--- C/C - --- ( 83_G )
( 57_C )--- 5/5 s --- ( 83_G )
( 57_C )--- +/+ c --- ( 82_G )
( 56_A )--- H/S t --- ( 83_G )
( 56_A )--- C/C - --- ( 57_C )
( 55_C )--- C/C - --- ( 56_A )
( 56_A )--- 5/5 s --- ( 84_A )
( 83_G )--- C/C - --- ( 84_A )
( 54_U )--- C/C - --- ( 55_C )
( 53_A )--- H/h t --- ( 84_A )
( 53_A )--- C/C - --- ( 54_U )
( 52_U )--- C/C - --- ( 53_A )
( 51_G )--- C/C - --- ( 52_U )
( 84_A )--- C/C - --- ( 85_A )
( 14_U )--- -/- c --- ( 85_A )
( 15_C )--- +/+ c --- ( 51_G )
( 14_U )--- C/C - --- ( 15_C )
bayespairing/test/2GDI.X.2.desc
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id: 2
Bases: 18_G 19_G 20_U 45_A 46_U 47_A 48_C
( 45_A )--- C/C - --- ( 46_U )
( 46_U )--- C/C - --- ( 47_A )
( 20_U )--- -/- c --- ( 45_A )
( 47_A )--- C/C - --- ( 48_C )
( 18_G )--- +/+ c --- ( 48_C )
( 19_G )--- W/W c --- ( 47_A )
( 19_G )--- C/C - --- ( 20_U )
( 18_G )--- C/C - --- ( 19_G )
bayespairing/test/2GDI.X.6.desc
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9b7a2487
id: 6
Bases: 59_U 60_G 61_A 62_U 63_C 76_G 77_C 78_G 79_U 80_A
( 76_G )--- C/C - --- ( 77_C )
( 63_C )--- +/+ c --- ( 76_G )
( 62_U )--- C/C - --- ( 63_C )
( 77_C )--- 3/3 s --- ( 78_G )
( 78_G )--- C/C - --- ( 79_U )
( 77_C )--- C/C - --- ( 78_G )
( 61_A )--- 5/5 s --- ( 63_C )
( 61_A )--- C/C - --- ( 62_U )
( 78_G )--- 5/5 s --- ( 80_A )
( 79_U )--- C/C - --- ( 80_A )
( 59_U )--- -/- c --- ( 80_A )
( 60_G )--- 5/5 s --- ( 80_A )
( 60_G )--- 3/3 s --- ( 61_A )
( 60_G )--- W/H c --- ( 78_G )
( 60_G )--- C/C - --- ( 61_A )
( 59_U )--- C/C - --- ( 60_G )
bayespairing/test/2GIS.A.1.desc
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id: 1
Bases: 8_C 9_A 10_A 11_G 12_A 13_G 41_C 42_G 60_C 61_A 62_A 63_U 64_U 85_A 86_G
( 64_U )--- -/- c --- ( 85_A )
( 63_U )--- C/C - --- ( 64_U )
( 62_A )--- C/C - --- ( 63_U )
( 61_A )--- C/C - --- ( 62_A )
( 60_C )--- C/C - --- ( 61_A )
( 42_G )--- +/+ c --- ( 60_C )
( 41_C )--- C/C - --- ( 42_G )
( 13_G )--- 5/5 s --- ( 42_G )
( 13_G )--- +/+ c --- ( 41_C )
( 12_A )--- C/C - --- ( 13_G )
( 11_G )--- C/C - --- ( 12_A )
( 10_A )--- C/C - --- ( 11_G )
( 64_U )--- 5/5 s --- ( 86_G )
( 85_A )--- C/C - --- ( 86_G )
( 8_C )--- +/+ c --- ( 86_G )
( 9_A )--- C/C - --- ( 10_A )
( 8_C )--- C/C - --- ( 9_A )
bayespairing/test/2GIS.A.2.desc
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9b7a2487
id: 2
Bases: 13_G 14_A 15_G 40_C 41_C
( 15_G )--- +/+ c --- ( 40_C )
( 40_C )--- C/C - --- ( 41_C )
( 13_G )--- +/+ c --- ( 41_C )
( 14_A )--- C/C - --- ( 15_G )
( 13_G )--- C/C - --- ( 14_A )
bayespairing/test/2GIS.A.5.desc
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9b7a2487
id: 5
Bases: 44_C 45_A 46_A 47_C 56_G 57_U 58_G
( 47_C )--- +/+ c --- ( 56_G )
( 56_G )--- C/C - --- ( 57_U )
( 46_A )--- C/C - --- ( 47_C )
( 57_U )--- C/C - --- ( 58_G )
( 44_C )--- +/+ c --- ( 58_G )
( 45_A )--- 5/5 s --- ( 58_G )
( 45_A )--- S/H t --- ( 57_U )
( 45_A )--- C/C - --- ( 46_A )
( 44_C )--- C/C - --- ( 45_A )
bayespairing/test/2GIS.A.7.desc
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9b7a2487
id: 7
Bases: 64_U 65_C 66_C 67_U 68_G 69_C 82_G 83_A 84_A 85_A
( 83_A )--- C/C - --- ( 84_A )
( 82_G )--- C/C - --- ( 83_A )
( 69_C )--- 5/5 s --- ( 83_A )
( 69_C )--- +/+ c --- ( 82_G )
( 68_G )--- C/C - --- ( 69_C )
( 67_U )--- C/C - --- ( 68_G )
( 66_C )--- C/C - --- ( 67_U )
( 84_A )--- C/C - --- ( 85_A )
( 64_U )--- -/- c --- ( 85_A )
( 65_C )--- C/C - --- ( 66_C )
( 64_U )--- C/C - --- ( 65_C )
bayespairing/test/2fold_cv_RELIABLE_indices.pickle
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bayespairing/test/2fold_cv_RELIABLE_shuffled_indices.pickle
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bayespairing/test/2fold_cv_RELIABLE_ss_indices.pickle
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bayespairing/test/cob_riboswitch_dataset_construction.ipynb
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bayespairing/test/cob_riboswitch_folding_experiments.ipynb
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bayespairing/test/cob_riboswitch_junction_experiments.ipynb
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