fixed tuple out of range issue

bayespairing/src/parse_sequences.py

@@ -248,7 +248,7 @@ def run_fasta(input, modules_to_parse, dataset, ss="", arguments={}):
             index = 0
             while index + w < len(input):
                 #print("Running Bayespairing on sequence window:", index, index + w)
-                print(input[index:index + w])
+                #print(input[index:index + w])
                 bf = max(0, index)
                 maxs = run_BP(input[index:index + w], ss, modules_to_parse, dataset, "NONE", m, n, sm, mc, p, k,sscons)
                 for mod in modules_to_parse:
@@ -261,7 +261,7 @@ def run_fasta(input, modules_to_parse, dataset, ss="", arguments={}):
                     all_maxes.append((mod, index, corrected_maxes))
                 index = index + s
             #print("Running Bayespairing on sequence part:", index, len(input))
-            print(input[index:])
+            #print(input[index:])
             maxs = run_BP(input[index:], ss, modules_to_parse, dataset, "NONE", m, n, sm, mc, p, k,sscons)
             for mod in modules_to_parse:
                 corrected_maxes = []
@@ -324,7 +324,7 @@ def present_output(all_maxes, threshold, offset=0):
         if len(m) < 2:
             continue
         current_module = m[0]
-        for sub_max in range(len(m)):
+        for sub_max in range(len(m)-2):
             if sub_max % 3 == 1:
                 this_max = [round(m[sub_max], 3), *(seq_ranges(m[sub_max + 1],m[sub_max + 2]))]
                 if this_max[0] > threshold and not check_already_there(output, this_max, current_module):