added sliding window in parse_sequences

src/parse_sequences.py

@@ -78,11 +78,18 @@ def run_fasta(input, modules_to_parse,dataset,ss = "",arguments={}):
             while index+100<len(input):
                 print("Running Bayespairing on sequence:",input[index:index+100])
                 maxs = run_BP(input[index:index+100], ss, modules_to_parse, dataset, "NONE",m,n,sm,mc,k)
-                #print(maxs)
-                all_maxes.append(maxs)
+                corrected_maxes = []
+                for cand in maxs:
+                    score,pos = cand
+                    corrected_maxes.append([score,[i+index for i in pos]])
+                all_maxes.append(corrected_maxes)
                 index=index+100
             maxs = run_BP(input[index:], ss, modules_to_parse, dataset, "NONE",m,n,sm,mc,k)
-            all_maxes.append(maxs)
+            corrected_maxes = []
+            for cand in maxs:
+                score,pos = cand
+                corrected_maxes.append([score,[i+index for i in pos]])
+            all_maxes.append(corrected_maxes)
             print("FINAL RESULTS:")
             print(all_maxes)