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Carlos GO
RNAmigos_server
Commits
fa84fb8b
Commit
fa84fb8b
authored
Jun 17, 2020
by
Carlos GO
Browse files
syntax
parent
1ad2a162
Changes
1
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pdb2fr3d.py
View file @
fa84fb8b
...
...
@@ -36,8 +36,8 @@ def parse_fr3d(fr3d_path, pdb_path):
if
label
in
VALID_EDGES
:
label
=
label
[
0
]
+
""
.
join
(
sorted
(
label
[
1
:]))
G
.
add_edge
((
chain_1
,
pos_1
),
(
chain_2
,
pos_2
),
label
=
label
)
nucs
[(
chain_1
,
str
(
pos_1
)]
=
nuc_1
nucs
[(
chain_2
,
str
(
pos_2
)]
=
nuc_2
nucs
[(
chain_1
,
str
(
pos_1
)
)
]
=
nuc_1
nucs
[(
chain_2
,
str
(
pos_2
)
)
]
=
nuc_2
nx
.
set_node_attributes
(
G
,
nucs
,
'nt'
)
# use BioPython to fill in the backbones
...
...
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