use user pdb

app.py

@@ -79,10 +79,6 @@ def submitted():
         os.makedirs(job_dir)
 
 
-        #fasta takes priority
-
-        ss_in_file = False
-
         if 'pdb' in request.files:
             try:
                 f = request.files['pdb']
@@ -91,7 +87,6 @@ def submitted():
                 f.save(save_path)
 
                 pdb = save_path
-                print("USING USER FASTA")
             except Exception as e:
                 print("FILE UPLOAD FAILED")
                 pass

rnamigos_launcher.py

@@ -10,8 +10,8 @@ from fp2lig import *
 
 def launch(pdb_path, library_path, n_hits=30, run='rnamigos-ismb'):
 
-    # G = get_graph(pdb_path)
-    G = nx.read_gpickle(os.path.join("static", "samples", "1aju_arg.nx"))
+    G = get_graph(pdb_path)
+    # G = nx.read_gpickle(os.path.join("static", "samples", "1aju_arg.nx"))
     print("LOADING MODEL")
     run = 'ismb-tune_0'
     model, meta = load_model(run)