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Carlos GO
RNAmigos_server
Commits
9f4c3e85
Commit
9f4c3e85
authored
Jun 17, 2020
by
Carlos GO
Browse files
uncomment
parent
f3b24dd2
Changes
1
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Inline
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pdb2fr3d.py
View file @
9f4c3e85
...
...
@@ -26,7 +26,6 @@ def parse_fr3d(fr3d_path, pdb_path):
G
=
nx
.
Graph
()
nucs
=
{}
"""
with
open
(
fr3d_path
,
"r"
)
as
fr3d
:
for
line
in
fr3d
:
base_1
,
label
,
base_2
=
line
.
split
(
","
)
...
...
@@ -40,7 +39,6 @@ def parse_fr3d(fr3d_path, pdb_path):
nucs
[(
chain_1
,
pos_1
)]
=
nuc_1
nucs
[(
chain_2
,
pos_2
)]
=
nuc_2
nx
.
set_node_attributes
(
G
,
nucs
,
'nt'
)
"""
# use BioPython to fill in the backbones
parser
=
MMCIFParser
(
QUIET
=
True
)
...
...
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