Commit 8cff883c authored by Carlos GO's avatar Carlos GO
Browse files

paths

parent 44c1048f
......@@ -67,6 +67,7 @@ def get_fr3d(pdb_path):
pdb_folder, filename = os.path.split(pdb_path)
dest = os.path.join(pdb_folder, filename.replace(".cif", ".csv"))
print(f"pdb {pdb_folder}, {filename}, {dest}")
matlab_cmd = f"setup_path; addpath '{pdb_folder}';annotate_pdb('{filename}', '{dest}');quit"
try:
subprocess.run(["matlab",
......
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