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Carlos GO
RNAmigos_GCN
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fdd6f849
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fdd6f849
authored
Feb 03, 2020
by
Carlos GO
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@@ -8,5 +8,23 @@ This repository is an implementation of ligand prediction from an RNA base pairi
> [[Paper]](https://www.biorxiv.org/content/10.1101/701326v3)
<img
src=
"images/rnamigos.png"
width=
"200"
/>

We implement three major components:
*
`data_processor`
: building a training set
*
`learning`
: RGCN training
*
`tools`
: general tools such as graph drawing, loading, etc.
*
`post`
: validation and visualization of results
See README in each folder for details on how to use each component.
## Requirements
*
Python >= 3.6
*
Pytorch
*
dgl
*
OpenBabel
*
BioPython
*
tqdm
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