Commit 8f6c6d0e authored by Carlos GO's avatar Carlos GO
Browse files

fixed imports

parent 2277d680
......@@ -20,6 +20,8 @@ NOTE: The user friendly API is currently being built and tested. Sample usage de
## Installing
pip will automatically install any necessary dependencies.
```
git clone git@jwgitlab.cs.mcgill.ca:cgoliver/rnamigos.git
pip install .
......@@ -50,7 +52,7 @@ From a graph object, or a pickled graph we can draw the graph.
```python
>>> G = nx.read_gpickle('../Data/sample_graphs/3ds7_GNG_P.nxpickle')
>>> H = nx.read_gpickle('../Data/sample_graphs/3skt_GNG_L.nxpickle')
>>> from RNAmigos import pocket_draw
>>> from RNAmigos.pocket_draw import graph_draw
>>> graph_draw(G, show=True)
```
......@@ -61,7 +63,7 @@ From a graph object, or a pickled graph we can draw the graph.
For a pair of graphs.
```python
>>> from RNAmigos import ged
>>> from RNAmigos.rna_ged import ged
>>> graphs = (G, H) #graphs currently need to be pased as single argument for multiprocessing.
>>> aln, (G, H), time = ged(graphs)
>>> aln.cost # get distance
......
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