todo refs

talk.tex

@@ -96,7 +96,7 @@
 	\begin{figure}[h!]
 	\centering
 	\includegraphics[width=0.6\textwidth]{struc.jpeg}
-	\caption{This is RNA.}
+	\caption{This is RNA. ~\cite{reinharz2016algorithmic}}
 	\label{fig:rna}
 \end{figure}
 
@@ -117,7 +117,7 @@
 			\end{centering}
 		\end{column}
 		\begin{column}{0.7\textwidth}
-			\includegraphics[width=\textwidth]{lws.png}
+			\includegraphics[width=\textwidth]{lws.png} \cite{leontis2001geometric}
 		\end{column}
 	\end{columns}
 
@@ -180,7 +180,7 @@
 			\begin{itemize}
 				\item Thermodynamic ensembles could have shaped the discovery of complex structures.
 				\item More complex evolutionary explorations needed to explain full distribution.
-				\item Manuscript accepted at RNA journal. \footnote{Oliver, Carlos G., Vladimir Reinharz, and Jerome Waldispuhl. ``The necessary emergence of structural complexity in self-replicating RNA populations." bioRxiv (2019): 218990.}
+				\item Manuscript accepted at RNA journal. \cite{oliver2019necessary}
 			\end{itemize}
 		\item Next Steps
 			\begin{itemize}
@@ -352,10 +352,10 @@
 		\hline
        	         & flexible motifs & all ss & graph-based & inductive \\ \hline
 	         rna3dmotif    &       \xmark          &   \xmark     &     \cmark        &      \xmark     \\ \hline
-	         3d motif atlas &        \xmark\cmark        &     \xmark   &     \xmark\cmark        &      \xmark     \\ \hline
+	         3d motif atlas &       $\sim$        &     \xmark   &     $\sim$        &      \xmark     \\ \hline
 	         carnaval    &       \xmark          &   \xmark     &     \cmark        &      \xmark     \\ \hline			
-		RNAMSC        &      \cmark           &    \xmark    &      \xmark       &       \xmark    \\ \hline
-		{\bf VERNAL}        &         \cmark        &   \cmark     &        \cmark     &          \cmark
+		RNAMSC \cite{ge2018novo}       &      \cmark           &    \xmark    &      \xmark       &       \xmark    \\ \hline
+		{\bf \vernal}        &         \cmark        &   \cmark     &        \cmark     &          \cmark
 \end{tabular}%
 }
 \end{table}
@@ -519,8 +519,25 @@
 	\frametitle{Related Work}
 	
 	\begin{itemize}
-		\item Hajun Dai
+		\item Existing methods focus on strict edge conservation.
+		\item Mostly applied to aligning protein-protein interaction networks.
 	\end{itemize}
+	
+	
+	\begin{table}[]
+		\resizebox{\textwidth}{!}{%
+		\begin{tabular}{lllll}
+		\hline
+       	         & Node cost  & Edge Cost & Custom Cost  & Inductive \\ \hline
+	         IsoRank    &       \cmark          &   $\sim$     &     \cmark        &      \xmark     \\ \hline
+	         GRALL &        \cmark        &    \xmark   &     $\sim$        &      \xmark     \\ \hline
+	         WAVE    &       \xmark          &  $\sim$     &     \xmark        &      \xmark     \\ \hline			
+		Gromov-Wasserstein \cite{ge2018novo}       &      \cmark           &    \xmark    &      \xmark       &       \xmark    \\ \hline
+		{\bf \garl}        &         \cmark        &   \cmark     &        \cmark     &          \cmark
+\end{tabular}%
+}
+\end{table}
+
 \end{frame}
 	
 \begin{frame}
@@ -646,6 +663,13 @@
 }
 
 
+
+\begin{frame}[allowframebreaks]
+	\frametitle{References}
+	\bibliographystyle{plain}
+	\bibliography{biblio}
+\end{frame}
+
 \begin{frame}{Picking $d$: Graphlet Distance}
     Idea: Compare structure of nodes in each ring with alignments.
     \begin{equation}