Commit 4854c403 authored by Carlos GO's avatar Carlos GO
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maternal done

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......@@ -670,3 +670,115 @@
year={2018},
publisher={Oxford University Press}
}
@article{tinoco1999rna,
title={How RNA folds},
author={Tinoco Jr, Ignacio and Bustamante, Carlos},
journal={Journal of molecular biology},
volume={293},
number={2},
pages={271--281},
year={1999},
publisher={Elsevier}
}
@article{nudler2004riboswitch,
title={The riboswitch control of bacterial metabolism},
author={Nudler, Evgeny and Mironov, Alexander S},
journal={Trends in biochemical sciences},
volume={29},
number={1},
pages={11--17},
year={2004},
publisher={Elsevier}
}
@article{nussinov1980fast,
title={Fast algorithm for predicting the secondary structure of single-stranded RNA},
author={Nussinov, Ruth and Jacobson, Ann B},
journal={Proceedings of the National Academy of Sciences},
volume={77},
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pages={6309--6313},
year={1980},
publisher={National Acad Sciences}
}
@article{nawrocki2009structural,
title={Structural RNA homology search and alignment using covariance models},
author={Nawrocki, Eric},
year={2009}
}
@article{heyne2012graphclust,
title={GraphClust: alignment-free structural clustering of local RNA secondary structures},
author={Heyne, Steffen and Costa, Fabrizio and Rose, Dominic and Backofen, Rolf},
journal={Bioinformatics},
volume={28},
number={12},
pages={i224--i232},
year={2012},
publisher={Oxford University Press}
}
@article{oliver2019extended,
title={Extended RNA base pairing networks imprint small molecule binding preferences},
author={Oliver, Carlos G and Gendron, Roman Sarrazin and Moitessier, Nicolas and Mallet, Vincent and Reinharz, Vladimir and Waldisp{\"u}hl, J{\'e}r{\^o}me},
journal={bioRxiv},
pages={701326},
year={2019},
publisher={Cold Spring Harbor Laboratory}
}
@article{oliver2017necessary,
title={The necessary emergence of structural complexity in self-replicating RNA populations},
author={Oliver, Carlos G and Reinharz, Vladimir and Waldisp{\"u}hl, J{\'e}r{\^o}me},
journal={bioRxiv},
pages={218990},
year={2019},
publisher={Cold Spring Harbor Laboratory}
}
@article{eddy2001non,
title={Non--coding RNA genes and the modern RNA world},
author={Eddy, Sean R},
journal={Nature Reviews Genetics},
volume={2},
number={12},
pages={919},
year={2001},
publisher={Nature Publishing Group}
}
@article{waldispuhl2008efficient,
title={Efficient algorithms for probing the RNA mutation landscape},
author={Waldisp{\"u}hl, J{\'e}r{\^o}me and Devadas, Srinivas and Berger, Bonnie and Clote, Peter},
journal={PLoS computational biology},
volume={4},
number={8},
pages={e1000124},
year={2008},
publisher={Public Library of Science}
}
@article{waldispuhl2011unbiased,
title={An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure},
author={Waldisp{\"u}hl, J{\'e}r{\^o}me and Ponty, Yann},
journal={Journal of Computational Biology},
volume={18},
number={11},
pages={1465--1479},
year={2011},
publisher={Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA}
}
@article{stich2008structural,
title={On the structural repertoire of pools of short, random RNA sequences},
author={Stich, Michael and Briones, Carlos and Manrubia, Susanna C},
journal={Journal of theoretical biology},
volume={252},
number={4},
pages={750--763},
year={2008},
publisher={Elsevier}
}
@article{fontana1998shaping,
title={Shaping space: the possible and the attainable in RNA genotype--phenotype mapping},
author={Fontana, Walter and Schuster, Peter},
journal={Journal of Theoretical Biology},
volume={194},
number={4},
pages={491--515},
year={1998},
publisher={Elsevier}
}
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