Commit 1c3037fd authored by Carlos GO's avatar Carlos GO
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parent b50c9aa8
# LW3D
Drawing Leontis Westhof graphs in 3D.
How to use:
Call the function `pdb_to_markers(pdb, carna)` inside `marker_file.py` with the path to a `pdb` file and the path to a carnaval `networkx` `gpickle`.
The function will save a `.cmm` file in the current directory with Chimerea marker coordinates.
In chimera, click Open and select the `.cmm` file. The graph should be drawn with CWW edges in green and non-CWW base pairs in red.
If you want to see the graph on top of the crystal structure, keep the graph open and click Open again but select the crystal structure.
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